All functions

calc.maxcor()

Calculate maximum correlation

calc.post()

Calculates SAVER posterior

calc.estimate() calc.estimate.mean() calc.estimate.null()

Calculate estimate

calc.loglik.a() calc.loglik.b() calc.loglik.k()

Calculates marginal likelihood

combine.saver()

Combines SAVER

cor.genes() cor.cells()

Calculates gene-to-gene and cell-to-cell SAVER correlation

expr.predict()

Calculates SAVER prediction.

get.mu()

Output prior predictions

linnarsson

Mouse brain single-cell RNA-seq dataset

linnarsson_saver

SAVER recovered mouse brain single-cell RNA-seq dataset

calc.a() calc.b() calc.k()

Optimizes variance

sample.saver()

Samples from SAVER

SAVER-package

SAVER: Single-cell Analysis Via Expression Recovery

saver()

Runs SAVER

saver.fit() saver.fit.mean() saver.fit.null()

Fits SAVER