calc.maxcor()
Calculate maximum correlation
calc.post()
Calculates SAVER posterior
calc.estimate() calc.estimate.mean() calc.estimate.null()
calc.estimate()
calc.estimate.mean()
calc.estimate.null()
Calculate estimate
calc.loglik.a() calc.loglik.b() calc.loglik.k()
calc.loglik.a()
calc.loglik.b()
calc.loglik.k()
Calculates marginal likelihood
combine.saver()
Combines SAVER
cor.genes() cor.cells()
cor.genes()
cor.cells()
Calculates gene-to-gene and cell-to-cell SAVER correlation
expr.predict()
Calculates SAVER prediction.
get.mu()
Output prior predictions
linnarsson
Mouse brain single-cell RNA-seq dataset
linnarsson_saver
SAVER recovered mouse brain single-cell RNA-seq dataset
calc.a() calc.b() calc.k()
calc.a()
calc.b()
calc.k()
Optimizes variance
sample.saver()
Samples from SAVER
SAVER-package
SAVER: Single-cell Analysis Via Expression Recovery
saver()
Runs SAVER
saver.fit() saver.fit.mean() saver.fit.null()
saver.fit()
saver.fit.mean()
saver.fit.null()
Fits SAVER