Publications

Google Scholar

• Huang, M., Chen, C., Sun, L.Z. (2023). Statistical Interpretation and Comparison of Waterfall Plots. JCO Clinical Cancer Informatics, 7, e2300132

• Reeder J., Huang, M., Kaminker, J.S., Paulson, J.N. (2021). MicrobiomeExplorer: an R package for the analysis and visualization of microbial communities. Bioinformatics, 37 (9), 1317-1318.

• Huang, M. (2020). A Statistical Framework for Denoising Single-cell RNA Sequencing Data (Dissertation). PQDT-UK & Ireland.

• Huang, M., Zhang, Z., Zhang, N.R. (2020). Dimension reduction and denoising of single-cell RNA sequencing data in the presence of observed confounding variables. bioRxiv.

• Wang, J., Agarwal, D., Huang, M., Hu, G., Zhou, Z., Ye, C., Zhang, N.R. (2019). Data Denoising with transfer learning in single-cell transcriptomics. Nature Methods, 16 (9), 875-878.

• Huang, M., Wang, J., Torre, E., Dueck, H., Shaffer, S., Bonasio, R., … Zhang, N. R. (2018). SAVER: Gene expression recovery for single-cell RNA sequencing. Nature Methods, 15 (7), 539–542.

• Wang, J., Huang, M., Torre, E., Dueck, H., Shaffer, S., Murray, J., … Zhang, N. R. (2018). Gene Expression Distribution Deconvolution in Single Cell RNA Sequencing. Proceedings of the National Academy of Sciences of the United States of America, 115 (28), E6437-E6446.

• Jayasinghe, R. G., Cao, S., Gao, Q., Wendl, M. C., Vo, N. S., Reynolds, S. M., … Ding, L. (2018). Systematic Analysis of Splice-Site-Creating Mutations in Cancer. Cell Reports, 23 (1), 270–281.e3.

• Jin, T., Huang, M., Jiang, J., Smith, P., & Xiao, T. S. (2018). Crystal structure of human NLRP12 PYD domain and implication in homotypic interaction. PLOS ONE, 13 (1), e0190547.

• Wyczalkowski, M. A., Wylie, K. M., Cao, S., Mclellan, M. D., Flynn, J., Huang, M., … Ding, L. (2017). BreakPoint Surveyor: A pipeline for structural variant visualization. Bioinformatics, 33 (19), 3121–3122.

• Jin, T., Chuenchor, W., Jiang, J., Cheng, J., Li, Y., Fang, K., … Xiao, T. S. (2017). Design of an expression system to enhance MBP-mediated crystallization. Scientific Reports, 7 (January), 40991.

• Jin, T., Huang, M., Smith, P., Jiang, J., & Xiao, T. S. (2013). Structure of the caspase-recruitment domain from a zebrafish guanylate-binding protein. Acta Crystallographica Section F Structural Biology and Crystallization Communications, 69 (8), 855–860.

• Jin, T., Huang, M., Smith, P., Jiang, J., & Xiao, T. S. (2013). The structure of the CARD8 caspase-recruitment domain suggests its association with the FIIND domain and procaspases through adjacent surfaces. Acta Crystallographica Section F Structural Biology and Crystallization Communications, 69 (5), 482–487.